usage - fix broken link and add latest kit version for Takara UMI prep #1613
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- Add entry for PR nf-core#1613: Fix broken link and add latest kit version for Takara UMI prep - Add entry for PR nf-core#1614: Template update for nf-core/tools v3.4.1 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <[email protected]>
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Warning Newer version of the nf-core template is available. Your pipeline is using an old version of the nf-core template: 3.3.2. For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation. |
pinin4fjords
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Nov 13, 2025
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Thanks @pontushojer ! I just pushed a CHANGELOG update but otherwise looks good.
🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <[email protected]>
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Hi, I noticed that the current link was broken and also added a reference to the latest version of the kit (now called "SMART-Seq Total RNA Pico Input with UMIs"). The new kit has the same read layout and adaptors, and I have successfully run samples through this pipeline using these parameters.
PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).